Thanks for both suggestions. I guess the way I see it she is a sim, but she is a glitch, and so in this virtual world she begins to see it for what it is, and develops free will, free of the system itself so the computer that created the world will will be terrified of it.
In terms of the hope for humanity, maybe I could tweak the story a little bit. Maybe, there could be an outside hope for humanity. That at first, they are trapped inside a system, but by the end she could end up in a real body and represent mankind's rebirth.